Barbara Pardini

Publications

• The Non-Coding RNA Journal Club: Highlights on Recent Papers-8
• The Non-Coding RNA Journal Club: Highlights on Recent Papers—11
• Gluten-free diet affects fecal small non-coding RNA profiles and microbiome composition in celiac disease supporting a host-gut microbiota crosstalk
• The Non-Coding RNA Journal Club: Highlights on Recent Papers—12
• Single nucleotide polymorphisms within MUC4 are associated with colorectal cancer survival
• DNA methylation profiling of asbestos-treated met5a cell line reveals novel pathways implicated in asbestos response
• Identification of plasma microRNAs as new potential biomarkers with high diagnostic power in human cutaneous melanoma
• Profiling small RNAs in CRC screening samples such as the widely used fecal immunochemical test, is it possible?
• Identification of novel circulating microRNAs in advanced heart failure by next‐generation sequencing
• Serum Extracellular Vesicle-Derived microRNAs as Potential Biomarkers for Pleural Mesothelioma in a European Prospective Study
• H2AX phosphorylation level in peripheral blood mononuclear cells as an event-free survival predictor for bladder cancer
• Increased micronucleus frequency in peripheral blood lymphocytes predicts the risk of bladder cancer
• Intake of natural compounds and circulating microrna expression levels: Their relationship investigated in healthy subjects with different dietary habits
• Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
• Small non-coding RNA profiling in human biofluids and surrogate tissues from healthy individuals: Description of the diverse and most represented species
• Fecal microRNAs as non-invasive biomarkers for the detection of colorectal cancer: A systematic review
• The prognostic value of basal DNA damage level in peripheral blood lymphocytes of patients affected by bladder cancer
• Polymorphisms in non-coding RNA genes and their targets sites as risk factors of sporadic colorectal cancer
• Exosomal microRNAs and other non-coding RNAs as colorectal cancer biomarkers: A review
• Circulating microRNAs combined with PSA for accurate and non-invasive prostate cancer detection
• Altered fecal small RNA profiles in colorectal cancer reflect gut microbiome composition in stool samples
• MicroRNA-binding site polymorphisms in genes involved in colorectal cancer etiopathogenesis and their impact on disease prognosis
• Polymorphisms in microRNA binding sites of mucin genes as predictors of clinical outcome in colorectal cancer patients
• MMP23B expression and protein levels in blood and urine are associated with bladder cancer
• The role of radiotherapy in metaplastic breast cancer: A propensity score-matched analysis of the SEER database
• MicroRNAs and long non-coding RNAs and their hormone-like activities in cancer
• Double-strand break repair and colorectal cancer: Gene variants within 3' UTRs and microRNAs binding as modulators of cancer risk and clinical outcome
• Discovery of common and rare genetic risk variants for colorectal cancer
• microRNA profiles in urine by next-generation sequencing can stratify bladder cancer subtypes
• Expression quantitative trait loci in ABC transporters are associated with survival in 5-FU treated colorectal cancer patients
• Mir-roring hypoxia in EGFR-TKI tolerance
• MicroRNAs as markers of progression in cervical cancer: A systematic review
• Coding variants in NOD-like receptors: An association study on risk and survival of colorectal cancer
• Stochastic epigenetic mutations are associated with risk of breast cancer, lung cancer, and mature b-cell neoplasms
• Functional polymorphisms in DNA repair genes are associated with sporadic colorectal cancer susceptibility and clinical outcome
• Epigenome-wide analysis of DNA methylation reveals a rectal cancer-specific epigenomic signature
• Correction: Single nucleotide polymorphisms within MUC4 are associated with colorectal cancer survival(PLoS ONE (2019)14:5 (e0216666) DOI: 10.1371/journal.pone.0216666)
• The Long Noncoding RNA CCAT2 Induces Chromosomal Instability Through BOP1-AURKB Signaling
• Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation (Nature Medicine, (2019), 25, 4, (667-678), 10.1038/s41591-019-0405-7)
• MicroRNA expression profiling in bladder cancer: The challenge of next-generation sequencing in tissues and biofluids
• Circulating miRNAs miR-34a and miR-150 associated with colorectal cancer progression
• Erratum: Altered fecal small RNA profiles in colorectal cancer reflect gut microbiome composition in stool samples (American Society for Microbiology (2019) 4:5 (e00289-19) DOI: 10.1128/mSystems.00289-19)
• Small Non-Coding RNA Profiling in Plasma Extracellular Vesicles of Bladder Cancer Patients by Next-Generation Sequencing: Expression Levels of miR-126-3p and piR-5936 Increase with Higher Histologic Grades
• DNA repair and cancer in colon and rectum: Novel players in genetic susceptibility
• Noncoding RNAs in Extracellular Fluids as Cancer Biomarkers: The New Frontier of Liquid Biopsies
• A Holistic Perspective: Exosomes Shuttle between Nerves and Immune Cells in the Tumor Microenvironment
• The Inhibitory Role of miR-486-5p on CSC Phenotype Has Diagnostic and Prognostic Potential in Colorectal Cancer
• SCIRT lncRNA Blocks the Shot of Breast Cancer Cells Self-Renewal Mechanism
• Adipocyte-derived extracellular vesicles regulate survival and function of pancreatic β cells
• Genetic variations in 3′UTRs of SMUG1 and NEIL2 genes modulate breast cancer risk, survival and therapy response
• Genotype and haplotype analysis of TP53 gene and the risk of pancreatic cancer: An association study in the Czech Republic
• Correction: Association between CASP8 -652 6N del polymorphism (rs3834129) and colorectal cancer risk: Results from a multi-centric study (PLoS ONE)
• 5-Fluorouracil-based chemotherapy for colorectal cancer and MTHFR/MTRR genotypes
• MicroRNA expression in relation to different dietary habits: A comparison in stool and plasma samples
• Single nucleotide polymorphisms within interferon signaling pathway genes are associated with colorectal cancer susceptibility and survival
• Differences in nucleotide excision repair capacity between newly diagnosed colorectal cancer patients and healthy controls
• Genome-wide association study for colorectal cancer identifies risk polymorphisms in German familial cases and implicates MAPK signalling pathways in disease susceptibility
• A gene-wide investigation on polymorphisms in the ABCG2/BRCP transporter and susceptibility to colorectal cancer
• Identification of candidate genes carrying polymorphisms associated with the risk of colorectal cancer by analyzing the colorectal mutome and microRNAome
• DNA damage and nucleotide excision repair capacity in healthy individuals
• Elevated levels of 14-3-3 proteins, serotonin, gamma enolase and pyruvate kinase identified in clinical samples from patients diagnosed with colorectal cancer
• Polymorphisms in mirna-binding sites of nucleotide excision repair genes and colorectal cancer risk
• Original article polymorphisms in CTNNBL1 in relation to colorectal cancer with evolutionary implications
• Shorter leukocyte telomere length is independently associated with poor survival in patients with bladder cancer
• Association between CASP8 -652 6N del polymorphism (rs3834129) and colorectal cancer risk: Results from a multi-centric study
• Variations in mismatch repair genes and colorectal cancer risk and clinical outcome
• Association between exposure-relevant polymorphisms in CYP1B1, EPHX1, NQO1, GSTM1, GSTP1 and GSTT1 and risk of colorectal cancer in a Czech population
• Restless legs syndrome in Czech patients with multiple sclerosis: An epidemiological and genetic study
• Genotype and haplotype analyses of TP53 gene in breast cancer patients: Association with risk and clinical outcomes
• Effect of blood storage conditions on DNA repair capacity measurements in peripheral blood mononuclear cells
• Genetic variants in C-type lectin genes are associated with colorectal cancer susceptibility and clinical outcome
• Variation within 3'-UTRs of base excision repair genes and response to therapy in colorectal cancer patients: A potential modulation of microRNAs binding
• Colorectal cancer risk and patients' survival: Influence of polymorphisms in genes somatically mutated in colorectal tumors
• Polymorphisms in microRNA genes as predictors of clinical outcomes in colorectal cancer patients
• Genotype and haplotype analysis of cell cycle genes in sporadic colorectal cancer in the Czech Republic
• Post-treatment recovery of suboptimal DNA repair capacity and gene expression levels in colorectal cancer patients
• Genetic variants in selenoprotein genes increase risk of colorectal cancer
• Mutations and polymorphisms in TP53 gene - An overview on the role in colorectal cancer
• Ornithine decarboxylase G316A genotype and colorectal cancer risk
• Genetic variation in adipokine genes and risk of colorectal cancer
• Differences in nucleotide excision repair capacity between newly diagnosed colorectal cancer patients and healthy controls (Mutagenesis (2012) 27, 2 (225-232))
• Variation in the vitamin D receptor gene is not associated with risk of colorectal cancer in the Czech Republic
• Gene expression variations: Potentialities of master regulator polymorphisms in colorectal cancer risk
• NBN 657del5 heterozygous mutations and colorectal cancer risk in the Czech Republic
• Ancestral susceptibility to colorectal cancer
• Sardinians genetic background explained by runs of homozygosity and genomic regions under positive selection
• A gene-wide investigation on polymorphisms in the taste receptor 2R14 (TAS2R14) and susceptibility to colorectal cancer
• Polymorphisms affecting micro-RNA regulation and associated with the risk of dietary-related cancers: A review from the literature and new evidence for a functional role of rs17281995 (CD86) and rs1051690 (INSR), previously associated with colorectal cancer
• Association of serum bilirubin and promoter variations in HMOX1 and UGT1A1 genes with sporadic colorectal cancer
• A comprehensive investigation on common polymorphisms in the mdr1/abcb1 transporter gene and susceptibility to colorectal cancer
• Genetic variation in adipokine genes and risk of colorectal cancer (European Journal of Endocrinology vol. 160 (6) (933-940))
• Shared ancestral susceptibility to colorectal cancer and other nutrition related diseases
• Polymorphisms in the XRCC1 gene modify survival of bladder cancer patients treated with chemotherapy
• Inherited variability in a master regulator polymorphism (rs4846126) associates with survival in 5-FU treated colorectal cancer patients
• MTHFR and MTRR genotype and haplotype analysis and colorectal cancer susceptibility in a case-control study from the Czech Republic
• Association between TAS2R38 gene polymorphisms and colorectal cancer risk: A case-control study in two independent populations of caucasian origin
• Meta-Analysis of Mismatch Repair Polymorphisms within the Cogent Consortium for Colorectal Cancer Susceptibility
• Polymorphisms of genes coding for ghrelin and its receptor in relation to colorectal cancer risk: A two-step gene-wide case-control study
• Molecular characteristics of mismatch repair genes in sporadic colorectal tumors in Czech patients
• Could polymorphisms in ATP-binding cassette C3/multidrug resistance associated protein 3 (ABCC3/MRP3) modify colorectal cancer risk?
• DNA repair genetic polymorphisms and risk of colorectal cancer in the Czech Republic
• Insulin pathway related genes and risk of colorectal cancer: INSR promoter polymorphism shows a protective effect
• Association of DNA repair polymorphisms with DNA repair functional outcomes in healthy human subjects
• Polymorphisms within micro-RNA-binding sites and risk of sporadic colorectal cancer
• Sporadic colorectal cancer and individual susceptibility: A review of the association studies investigating the role of DNA repair genetic polymorphisms
• Do polymorphisms and haplotypes of mismatch repair genes modulate risk of sporadic colorectal cancer?
• A fecal miRNA signature by small RNA sequencing accurately distinguishes colorectal cancers: results from a multicentric study
• 17β-estradiol promotes extracellular vesicle release and selective miRNA loading in ERα-positive breast cancer
• SnoRNA profiling in colorectal cancer and assessment of non-invasive biomarker capacity by ddPCR in fecal samples
• Modulation of faecal miRNAs highlights the preventive effects of a Mediterranean Low-Inflammatory Dietary Intervention
• Exploring the gut DNA virome in fecal immunochemical test stool samples reveals associations with lifestyle in a large population-based study
• TPM4 overexpression drives colon epithelial cell tumorigenesis by suppressing differentiation and promoting proliferation
• Fasting-mimicking diet counteracts gut microbial dysbiosis in experimental Lynch syndrome