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Publications

  • https://scholar.google.com/citations?user=xECTvNoAAAAJ&hl=en&authuser=1
  • Fibroblast state switching orchestrates dermal maturation and wound healing
  • scDiffCom: a tool for differential analysis of cell–cell interactions provides a mouse atlas of aging changes in intercellular communication
  • Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children
  • Non-genetic cancer cell plasticity and therapy-induced stemness in tumour relapse: 'What does not kill me strengthens me'.
  • Non-Darwinian dynamics in therapy-induced cancer drug resistance.
  • Distinct respiratory tract biological pathways characterizing ARDS molecular phenotypes
  • Loxl2 is dispensable for dermal development, homeostasis and tumour stroma formation
  • Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
  • Conceptual Confusion: The case of Epigenetics
  • The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude
  • A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse
  • An evolutionarily conserved ribosome-rescue pathway maintains epidermal homeostasis
  • Aging-related inflammation driven by cellular senescence enhances NAD consumption via activation of CD38+ pro-inflammatory macrophages
  • Single-nuclei characterization of pervasive transcriptional signatures across organs in response to COVID-19
  • Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS
  • Leveraging the Cell Ontology to classify unseen cell types
  • Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data
  • Upper airway gene expression reveals a more robust innate and adaptive immune response to SARS-CoV-2 in children compared with older adults
  • Consensus prediction of cell type labels in single-cell data with popV
  • Integration of Kinase and Calcium Signaling at the Level of Chromatin Underlies Inducible Gene Activation in T Cells
  • Tutorial: guidelines for manual cell type annotation of single-cell multi-omics datasets using interactive software
  • Transcriptomic profiling of blood from autoimmune hepatitis patients reveals potential mechanisms with implications for management
  • Affinity-enhanced purification of human antibodies by aqueous two-phase extraction
  • Partitioning of human antibodies in polyethylene glycol-sodium citrate aqueous two-phase systems
  • MicroRNA-9 Reveals Regional Diversity of Neural Progenitors along the Anterior-Posterior Axis
  • A protein phosphatase network controls the temporal and spatial dynamics of differentiation commitment in human epidermis
  • Reduced Intracellular Drug Accumulation in Drug-Resistant Leukemia Cells is Not Only Solely Due to MDR-Mediated Efflux but also to Decreased Uptake
  • Nonequilibrium Population Dynamics of Phenotype Conversion of Cancer Cells
  • A protein phosphatase network controls temporal and spatial dynamics of differentiation commitment in human epidermis
  • Dermal Blimp1 acts downstream of epidermal TGFβ and Wnt/β-catenin to regulate hair follicle formation and growth
  • A genome-wide screen identifies YAP/WBP2 interplay conferring growth advantage on human epidermal stem cells
  • Inhibition of β-catenin signalling in dermal fibroblasts enhances hair follicle regeneration during wound healing
  • Mouse aging cell atlas analysis reveals global and cell type-specific aging signatures
  • Indian Hedgehog release from renal epithelia drives local and remote organ fibrosis
  • Multimodal classification of neurons in the lateral septum
  • How Mycobacterium tuberculosis builds a home: Single-cell analysis reveals M. tuberculosis ESX-1-mediated accumulation of anti-inflammatory macrophages in infected mouse lungs
  • cellxgene: a performant, scalable exploration platform for high dimensional sparse matrices

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Co-workers & collaborators

Martin Jinye Zhang

Postdoc - Boston, MA

Martin Jinye Zhang

Camille Ezran

Camille Ezran

Norma Neff

Norma Neff

Olga Botvinnik

Olga Botvinnik

Angela Pisco's public data