figshare
Browse
Figure_1.tif (315.4 kB)

Budding yeast models.

Download (0 kB)
figure
posted on 2013-02-21, 02:48 authored by Karan Mangla, David L. Dill, Mark A. Horowitz

Nodes in the graph represent molecules, complexes, etc. Arrows with pointed heads represent activation, and arrows with bars indicate inhibition. Thin arrows represent a weight of 1/3, normal arrows represent a weight of 1 and thick arrows represent weight 3. (A) The model from Li, et al. [14]. (B) A subset of the model that highlights the first timing hazard. Nodes with values marked with * are enabled to change. If Cdc20 transitions from 1 to 0 before Cdh1 transitions from 0 to 1, Cdh1 will stay at 0, causing the cell cycle to arrest before it has returned to G1. (C) The hazard can be eliminated by replacing Cdc20 self-degradation with inhibition of Cdc20 by Cdh1, ensuring that Cdh1 transitions to 1 before Cdc20 transitions to 0. (D) The final speed-independent model for budding yeast.

History

Usage metrics

    PLOS ONE

    Keywords

    Licence

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC