khmer-0.8.tar.gz (18.05 MB)
khmer v0.8: k-mer counting & filtering FTW
Version 2 2016-04-17, 09:04
Version 1 2014-03-17, 20:14
software
posted on 2016-04-17, 09:04 authored by Michael R. CrusoeMichael R. Crusoe, Greg Edvenson, Jordan FishJordan Fish, Adina Howe, Eric McDonald, Joshua Nahum, Kaben Nanlohy, Jason PellJason Pell, Jared SimpsonJared Simpson, Camille ScottCamille Scott, Qingpeng ZhangQingpeng Zhang, C. Titus BrownC. Titus Brownkhmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.
This is code is v0.8 of khmer.
The most recent khmer citation is
Crusoe MR, Alameldin HF, Awad S et al. The khmer software package: enabling efficient nucleotide sequence analysis [version 1; referees: 2 approved, 1 approved with reservations]. F1000Research 2015, 4:900
(doi: 10.12688/f1000research.6924.1)
