check-genera-for-collisions.R (2.84 kB)
Taxon collision-checking script.
software
posted on 2022-08-14, 04:15 authored by Cale SeymourCale Seymour, Marike PalmerMarike Palmer, Eric D. Becraft, Ramunas Stepanauskas, Ariel D. Friel, Frederik SchulzFrederik Schulz, Tanja Woyke, Emiley Eloe-Fadrosh, Dengxun Lai, Jian-Yu Jiao, Zheng-Shuang Hua, Lan Liu, Zheng-Han Lian, Wen-Jun Li, Maria Chuvochina, Brianna Finley, Benjamin J. Koch, Duane P. Moser, Bruce A. Hungate, Brian P. HedlundScript for detecting DL < 3 collisions with a table of reference taxa. Inputs are headerless plaintext files with taxa, one taxon per line. See the script for more details.