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Hi-CO: 3D genome structure analysis with nucleosome resolution

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posted on 2020-11-04, 12:11 authored by Masae OhnoMasae Ohno, Tadashi Ando, David G. Priest, Yuichi Taniguchi
This repository includes the following files:

HiCO_SAMD_Programs.zip: Software for SA-MD simulation.
HiCO SA-MD tutorial: Tutorial for running HiCO_SA-MD_Programs.
R1_Chr1. zip and R2_Chr1.zip: Sample paired-end sequencing data with SAM format.
Create_Hi-COmatrix.zip: LabVIEW code for analyzing paired-end sequencing reads to output the Hi-CO matrix.

Funding

(1) The link between multi-layer omics dynamics in cells

Japan Science and Technology Agency

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Biophysics of higher-order molecular genome structure

Japan Society for the Promotion of Science

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Exploring mechanism of gene expression noise in eukaryotic cells

Japan Society for the Promotion of Science

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Creation of single-molecule-scale fluorescence analysis chemistry

Japan Society for the Promotion of Science

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Small number issues in the genome biology

Japan Society for the Promotion of Science

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Grants from the RIKEN Epigenome Manipulation Project

Astellas Foundation for Research on Metabolic Disorder

Takeda Science Foundation

Mochida Memorial Foundation for Medical and Pharmaceutical Research

RIKEN Foreign Postdoctoral Researcher fellowship

History

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    Categories

    Keywords

    NucleosomeHi-CMolecular dynamics simulationGenome Structure and RegulationBiophysicsStructural Biology (incl. Macromolecular Modelling)

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    CC BY 4.0

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