FTO-DAG and DAG-TPHMM data (sequence accession id of selected genome sets). See https://github.com/putian74/DAPG_TPHMM.git for source code please! The executables didn't work on some computers so we removed them.
Version 8 2025-03-19, 13:17
Version 7 2025-03-18, 12:57
Version 6 2025-01-14, 13:48
Version 5 2024-12-28, 03:55
Version 4 2024-12-03, 12:03
Version 3 2024-12-01, 03:14
Version 2 2024-12-01, 02:45
Version 1 2024-12-01, 02:27
software
posted on 2025-03-19, 13:17 authored by PU TIANPU TIAN, Xiao Lai, Haixin LuanA package of Python code for performing construction of Fragment Topological Order guided Directed Acyclic Graph (FTO-DAG) from a FASTA sequence file, and Python code for carry out training and multiple sequence alignment with Tiled Profile Hidden Markov Model on directed acyclic graph (DAG-TPHMM). Data.zip has IDs of the SARS-CoV-2 genomes analyzed in this study.
