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Repetive sequences of pale eelpout Lycodes pallidus genome

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posted on 2025-03-24, 02:49 authored by Ran ZhangRan Zhang

A chromosome-level genome assembly of pale eelpout (Lycodes pallidus) was created by integrating Illumina, PacBio circular consensus, and Hi-C sequencing technologies (BioProject accession number: PRJNA1231400). The final assembly spans a length of 753,345,134 bp with a scafford N50 of 28.58 Mb and a BUSCO completeness of 99.3%, indicating a high degree of completeness. Here, we present the annotated repetive sequnces, including three files: (1) General Feature Format file (lyc_final.fa.mod.EDTA.TEanno.gff3) produced by EDTA v2.2.2; (2) General Feature Format file (lyc_final.fa.out.gff) produced by RepeatModeler2 v2.0.6 and RepeatMasker v4.1.7-p1; and (3) dat file (lyc_final.masked.fa.2.7.7.80.10.50.500.dat) produced by TRF v4.10.0.

Funding

National Natural Science Foundation of China (42276247)

National Natural Science Foundation of China (42406243)

National Natural Science Foundation of China (41876176)

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