R Scripts climate-smart approach - MPA expansion

<p dir="ltr"><b>SCRIPTS</b></p><p><br></p><ul><li><code>0_config.R</code>: Configuration settings and global variables that standardize input parameters and file paths across all scripts.</li><li><code>exportPackages.R</code>: Script to load and manage necessary R packages used throughout the workflow to ensure reproducibility.</li><li><code>1.-prepareData.R</code>: Preparation of climate data for analysis.</li><li><code>2.-analogAnalysis.R</code>: Implements climate analog analyses to identify future climate analogs for specific regions, supporting climate-smart conservation assessments.</li><li><code>4.-produceAnimation.R</code>: Produces animations visualizing analogue temporal changes.</li><li><code>5.-biodiversity.R</code>: Preparing biodiversity data filtering.</li><li><code>6.-climate-smart-Dimensions.R</code>: Create the four layers for studied dimensions: connectivity, future habitats, refugia and adaptation potential.</li><li><code>7.-fraction-Protection-CSCI.R</code>: Calculates the fraction of species (all species and filtered by threatened and commercial species) protected under increasing protected area.</li><li><code>8.manuscript_figures.R</code>: Generates the figures for the manuscript.</li><li><code>9.supplementary_information_figures_tables.R</code>: Create supplementary figures and tables accompanying manuscript submissions.</li><li><code>mainFunctions.R</code>: Contains main custom functions and utilities called by the other scripts to streamline repetitive tasks and complex calculations.</li></ul><p dir="ltr"><b>RASTERS</b></p><ul><li><b>1. Sigma dissimilarity</b>: analogue and sigma dissimilarity.</li><li><b>2. Opportunitiy Layers</b> (adaptation, connectivity, future habitats, and refugia) to each SSP (SSP1-1.9, SSP1-2.6, SSP2-4.5, SSP3-7.0, and SSP5-8.5).</li><li><b>3. CSCI</b> to each SSP (SSP1-1.9, SSP1-2.6, SSP2-4.5, SSP3-7.0, and SSP5-8.5).</li><li><b>4. Priority Areas</b> to EEZ and the High Seas to SSP (SSP2-4.5, SSP3-7.0, and SSP5-8.5).</li></ul><p></p>