FungiSearch_V2

online resource

posted on 2025-01-05, 13:39 authored by Anne ChandelierAnne Chandelier, Julie HulinJulie Hulin

Description of programs and procedures to use the FungiSearch pipeline (version 2) dedicated to the analysis of Illumina MiSeq paired-end reads for the detection of fungal pathogens.

Funding

BiodivERsA_RESIPATH: Responses of European Forests and Society to Invasive Pathogens

The Research Council of Norway

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ALERTSEED (RF21/6344), Belgian Federal Public Service for Public Health, Food Chain Safety and Environment: Assessment of the risk of introduction of emergent forest diseases through trade o conifer seeds.

History

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Keywords

forest fungi plant pathogen molecular diagnostic MiSeq sequencing data High Throughput Sequencing Analysis

Licence

CC BY 4.0