figshare
Browse
movie_s1.mp4 (11.64 MB)

movie_s1.mp4

Download (11.64 MB)
media
posted on 2018-02-28, 23:20 authored by Daniel McDonaldDaniel McDonald, Adam Robbins-Pianka, Allison E. Mann, Alison Vrbanac, Amnon Amir, Angel Frazier, Antonio Gonzalez, Anupriya Tripathi, Ashkaan K. Fahimipour, Caitriona Brennen, Cameron Martino, Carlito Lebrilla, Catherine Lozupone, Cecil M. Lewis Jr., Charles Raison, Chi Zhang, Christian L. Lauber, Christina Warinner, Christopher A. Lowry, Chris Callewaert, Cinnamon Bloss, Curtis Huttenhower, Dan Knights, Dana Willner, Daniel McDonald, Daniela Domingos Galzerani, David J. Gonzalez, David A. Mills, Deepak Chopra, Dirk Gevers, Donna Berg-Lyons, Dorothy D. Sears, Doug Wendel, Elaine Wolfe, Elijah Lovelace, Embriette R. Hyde, Emily Pierce, Emily TerAvest, Emmanuel Montassier, Evan Bolyen, Frederic D. Bushman, Gail Ackermann, Gary D. Wu, George M. Church, Gholamali Rahnavard, Gordon Saxe, Grant Gogul, Gregory Humphrey, Hannah D. Holscher, Ivo Ugrina, J. Bruce German, J. Gregory Caporaso, Jack Gilbert, Jacob M. Wozniak, Jacqueline Kerr, Jacques Ravel, James Gaffney, James D. Lewis, James T. Morton, Jan S. Suchodolski, Janet K. Jansson, Jarrad T. Hampton-Marcell, Jason Bobe, Jeff Leach, Jeroen Raes, Jessica L. Green, Jessica L. Metcalf, John H. Chase, Jonathan A. Eisen, Jonathan Monk, Jose A. Navas-Molina, Jose C. Clemente, Joseph Petrosino, Joshua Ladau, Joshua Shorenstein, Julia Goodrich, Julia Gauglitz, Julian Jacobs, Justine W. Debelius, Karsten Zengler, Katherine S. Pollard, Kelly S. Swanson, Kim Lewis, Kris Mayer, Kyle Bittinger, Lindsay DeRight Goldasich, Lindsay Dillon, Livia S. Zaramela, Luke R. Thompson, Lynn M. Schriml, Maria G. Dominguez-Bello, Marta M. Jankowska, Martin Blaser, Matthew A. Jackson, Meg Pirrung, Michael Minson, Mike Kurisu, Nadim Ajami, Naseer Sangwan, Neil R. Gottel, Nicholas Chia, Noah Fierer, Owen White, Patrice D. Cani, Paul Wischmeyer, Pawel Gajer, Philip Strandwitz, Phillip Hugenholtz, Pieter C Dorrestein, Purna Kashyap, Rachel Dutton, Rachel S. Park, Ramnik J. Xavier, Rob Knight, Robert R. Dunn, Robert H. Mills, Rosa Krajmalnik-Brown, Ruth Ley, Sarah M. Owens, Scott T. Kelley, Scott Klemmer, Sébastien Matamoros, Shyamal Peddada, Siavash Mirarab, Stefan Janssen, Stephanie Moorman, Susan Holmes, Tara Schwartz, Tifani W. Eshoo-Anton, Tim Vigers, Timothy Spector, Tomasz Kosciolek, Varykina G. Thackray, Vineet Pandey, Will Van Treuren, Xin Fang, Yingfeng Chen, Yoshiki Vázquez-Baeza, Zhenjiang Zech Xu, Alexander A. Aksenov, Alexey V. Melnik, Alan Jarmusch, Justin Geier, Pavel Pevzner, Dmitry Meleshko, Bahar Behsaz, Nicolai Reeve, Ricardo Silva, Qiyun Zhu, Evguenia Kopylova, Clarisse Marotz, Larry Smarr, Tanya Nguyen, Hosein Mohimani, Lingjing Jiang, Austin Swafford, Dominic Nguyen, Se Jin Song, Karenina Sanders, Rodolfo Antonio Salido Benitez, Arthur Cole Heale, Dilip V. Jeste, Tanya T. Nguyen, Brennan, Caitriona, Max Abramson
Longitudinal samples from a large bowel resection. We place longitudinal samples collected prior to and following a large bowel resection in the context of samples from the AGP, the Earth Microbiome Project (https://www.ncbi.nlm.nih.gov/pubmed/29088705), intensive care unit patients (https://www.ncbi.nlm.nih.gov/pubmed/27602409), "extreme" diet samples from (https://www.ncbi.nlm.nih.gov/pubmed/24336217), and samples from the Hadza hunter-gatherers (https://www.ncbi.nlm.nih.gov/pubmed/28839072). Unweighted UniFrac was computed on this sample set, and principal coordinates were assessed. Using EMPeror (https://www.ncbi.nlm.nih.gov/pubmed/24280061), we then animate the plot by connect successive data points gut resection time series, while rotating the data frame. We first show the how the extent of change in the microbial community, and how the samples immediately following surgery resemble fecal samples from ICU patients. In the background of the animation, a black line connects a plant rhizosphere sample to a marine sediment sample, which have the same unweighted UniFrac distance (0.78) as the longitudinal sample immediately preceding and immediately following surgery.

History

Usage metrics

    Licence

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC