Supplementary Movie 1

An animated collection of all the Cytoscape graphs generated using Mash distances. Medoids were used as anchors for this analysis in the form of a reduced dataset where medoids were columns and each of the 10,667 genomes was a row. This table was then turned into a second table of medoid and genome pairs with the Mash distance for that pair. A sliding cutoff of step size 0.005 ranging from 0.04 to 0.0095 was applied to the Mash distances and pairs with a distance higher than a given cutoff were removed from the corresponding graph (i.e. the graph with a maximum Mash distance of 0.025 would have no pairs with a Mash distance above 0.025). Phylogroups split according to their Mash distance with the final frame containing only connections between medoids and the genomes the belonging to the corresponding phylogroup.

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