kallisto quantifications of Frahm et al., 2017

We analyzed a dataset (GEO Series GSE95363) consisting of reads derived from RNA-seq on primary mouse neural progenitor cells extracted from two regions of the brain, from female and male embryonic mice, and with and without dexamethasone treatment. Three replicates were performed for each of the eight combinatorial conditions, resulting in a total of 24 single-end RNA-seq samples. Samples were quantified with kallisto v0.43.1 (default kmer length 31, with 30 bootstraps per sample), using an index constructed from Ensembl Mus musculus GRCm38 cDNA release 88.