Field-scale detection of Bacterial Leaf Blight in rice based on UAV multispectral imaging and deep learning frameworks
Abstract:
Bacterial Leaf Blight (BLB) usually attacks rice in the flowering stage and can cause yield losses of up to 50% in severely infected fields. The resulting yield losses severely impact farmers, necessitating compensation from the regulatory authorities. This study introduces a new pipeline specifically designed for detecting BLB in rice fields using unmanned aerial vehicle (UAV) imagery. Employing the U-Net architecture with a ResNet-101 backbone, we explore three band combinations—multispectral, multispectral+NDVI, and multispectral+NDRE—to achieve superior segmentation accuracy. Due to the lack of suitable UAV-based datasets for rice disease, we generate our own dataset through disease inoculation techniques in experimental paddy fields. The dataset is increased using data augmentation and patch extraction methods to improve training robustness. Our findings demonstrate that the U-Net model incorporating ResNet-101 backbone trained with multispectral+NDVI data significantly outperforms other band combinations, achieving high accuracy metrics, including mean Intersection over Union (mIoU) of up to 97.20%, mean accuracy of up to 99.42%, mean F1-score of up to 98.56%, mean Precision of 97.97%, and mean Recall of 99.16%. Additionally, this approach efficiently segments healthy rice from other classes, minimizing misclassification and improving disease severity assessment. Therefore, the experiment concludes that the accurate mapping of the disease extent and severity level in the field is reliable to accurately allocating the compensation. The developed methodology has the potential for broader application in diagnosing other rice diseases, such as Blast, Bacterial Panicle Blight, and Sheath Blight, and could significantly enhance agricultural management through accurate damage mapping and yield loss estimation.
Dataset
The dataset can be accessed through the following Google Drive link: https://drive.google.com/drive/folders/17mCuj35euNjwNEIEqNqM_bJqNdHLuXwL?usp=sharing
Citation
If you use this code or dataset for your research, please consider citing:
@article{logavitool2025field,
title={Field-scale detection of Bacterial Leaf Blight in rice based on UAV multispectral imaging and deep learning frameworks},
author={Logavitool, Guntaga and Horanont, Teerayut and Thapa, Aakash and Intarat, Kritchayan and Wuttiwong, Kanok-on},
journal={PloS one},
volume={20},
number={1},
pages={e0314535},
year={2025},
publisher={Public Library of Science}
}
- Logavitool G, Horanont T, Thapa A, Intarat K, Wuttiwong K-o (2025) Field-scale detection of Bacterial Leaf Blight in rice based on UAV multispectral imaging and deep learning frameworks. PLoS ONE 20(1): e0314535. https://doi.org/10.1371/journal.pone.0314535
