pone.0281875.s002.doc (980.5 kB)
Download fileDistribution of SNP index association values on chromosomes.
journal contribution
posted on 2023-03-06, 18:24 authored by Xiaorong Xing, Haidong Liu, Jingxiu Ye, Yanmei Yao, Kaixiang Li, Yanling Li, Dezhi DuThe abscissas indicate the chromosome names, the colored dots represent the calculated SNP index (or Δ [SNP index]) values, and the black lines represents the fitted SNP index (or Δ [SNP index]) values. The top figure shows the distribution of SNP index values of recessive pools; the middle figure shows the distribution of SNP index values of dominant pools; and the bottom figure shows the distribution of Δ (SNP index) values, where the red lines represent the confidence intervals. The threshold lines are equal to 0.99, the blue lines represent the threshold lines with a confidence level of 0.95, and the green lines represent the threshold lines with a confidence level of 0.90.
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plant synaptic proteinlittle environmental effectgrowth hormone stimulationgenetic linkage mapdiv >< p80 – 919 linkage groupspossible candidate genesimportant agricultural trait89 %- 13213 lines derivedmight control sdcandidate gene predictionspecific dna bindinghigh sd linebrassica napus low sd linedna bindingsd linescandidate intervalnapus important rolegene cloningextremely highbnaa09g18250d bnaa09g14800d bnaa09g14070d b a9a yield performancetwo poolstwo parentstranscriptional regulationstress responsesresults layphenotypic variationnucleotide polymorphismsmembrane componentfour pairsfour environmentsfine mappingexplaining 10explained 5epistatic interactionsepistatic effectseight qtlsdouble haploiddifferentially expressedconstructed usingchromosomes a02callose synthaseadditive effects66 mb259 snp13 degs102 bins