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Additional file 9: Figure S1. of Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

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posted on 26.04.2016, 05:00 by Claudia Muñoz-Espinoza, Alex Di Genova, José Correa, Romina Silva, Alejandro Maass, Mauricio González-Agüero, Ariel Orellana, Patricio Hinrichsen
A, B, C, D, E. GO enrichment of five clusters identified in hierarchical clustering of 526 DE genes, from comparison between LB and SB segregants. A. GO categories over-represented in Cluster 1 (Biological Process); B. GO categories over-represented in Cluster 3 (Biological Process); C. GO categories over-represented in Cluster 4 (Molecular Function); D. GO categories over-represented in Cluster 5 (Biological Process); E. GO categories over-represented in Cluster 5 (Molecular Function). Biological Process and Molecular Function categories are shown, and only significantly over-represented categories were considered (p < 0.05 and FDR < 0.05). The analysis was performed using the online agriGO tool and the GO complete category. The boxes contain the GO number, the p-value (in parentheses), the category description, the number of genes in each category associated with the GO term versus the total of query genes and the number of genes in each category out of 14,511 genes of the reference genome of Vitis vinifera (PN40024, 12X.v1), with associated GO terms. The arrows indicate the relationships among the GO categories, as follows: black solid arrows mean that a GO category is also included in the other one; red solid arrows mean that one GO category positively regulates the other; green solid arrows mean that the GO category negatively regulates the other; black dashed arrows indicate that there are two significant nodes related to the GO category; and black dotted arrows indicate that only one significant node is related to the GO category. (PDF 567 kb)