Additional file 5 of SIMplyBee: an R package to simulate honeybee populations and breeding programs
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posted on 2024-08-13, 15:53 authored by Jana Obšteter, Laura K. Strachan, Jernej Bubnič, Janez Prešern, Gregor GorjancAdditional file 5. Genomics vignette. This vignette demonstrates how to obtain genomic informationof simulated honeybees. It also demonstrates, how to compute honeybeegenomic relationship matrices in SIMplyBee [62–67]. This vignette can also be found on https://cran.r-project.org/package=SIMplyBee and http://www.SIMplyBee.info .
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Javna Agencija za Raziskovalno Dejavnost RS Biotechnology and Biological Sciences Research Council
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spurring additional interestobtaining genomic dataincluding spatial awarenesshttp :// wwwcomplementary sex determinationalso developed functionsexperiencing colony lossesdecreased genetic variabilityglobal simulation parametersexisting simulator allowsaddressing haplodiploid inheritancefuture genetic gainsimulate honeybee populationsquantitative genetic valuesstochastic simulator alphasimrsimulates individual honeybeesmanaging multiple colonieshence freely availablehoneybee quantitative geneticssimulating colony eventsgenetic variabilityquantitative geneticshence allowshaplodiploid inheritancehoneybee populationscolony eventslevel genetichoneybee geneticsstochastic simulatorssimulator ’simulates individualsmultiple coloniesmating functionsholistic simulatorextended alphasimrhoneybee colonylevel valuesfuture developmentsfuture developmentbreeding valueswestern honeybeehoneybee genomehoneybee breedingenable honeybeetesting breedingspecific simulationssocial organisationresearch platformprovides detailsphenotype simulationjoin usinteraction withinessential toolseconomical damagedeveloping classesdetailed simulationdefined functioncost testingconservation strategiesconservation programscombine individualbreeding programsbreeding community
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