Additional file 1 of Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform

Lu, Dan; Kalantar, Katrina L.; Glascock, Abigail L.; Chu, Victoria T.; Guerrero, Estella S.; Bernick, Nina; Butcher, Xochitl; Ewing, Kirsty; Fahsbender, Elizabeth; Holmes, Olivia; Hoops, Erin; Jones, Ann E.; Lim, Ryan; McCanny, Suzette; Reynoso, Lucia; Rosario, Karyna; Tang, Jennifer; Valenzuela, Omar; Mourani, Peter M.; Pickering, Amy J.; Raphenya, Amogelang R.; Alcock, Brian P.; McArthur, Andrew G.; Langelier, Charles R.

doi:10.6084/m9.figshare.28942877.v1

Additional file 1 of Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform

journal contribution

posted on 2025-05-07, 03:27 authored by Dan Lu, Katrina L. Kalantar, Abigail L. Glascock, Victoria T. Chu, Estella S. Guerrero, Nina Bernick, Xochitl Butcher, Kirsty Ewing, Elizabeth Fahsbender, Olivia Holmes, Erin Hoops, Ann E. Jones, Ryan Lim, Suzette McCanny, Lucia Reynoso, Karyna Rosario, Jennifer Tang, Omar Valenzuela, Peter M. Mourani, Amy J. Pickering, Amogelang R. Raphenya, Brian P. Alcock, Andrew G. McArthur, Charles R. Langelier

Additional file 1: Supplementary methods for sample and data processing, and Fig. S1 showing a detailed diagram of the CZ ID AMR and mNGS workflows

Funding

Chan Zuckerberg Initiative Chan Zuckerberg Biohub NIH/NHLBI Canadian Institutes of Health Research McMaster University

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Keywords

Antimicrobial resistance Metagenomics Whole-genome sequencing Chan Zuckerberg ID CZ ID

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CC BY

Additional file 1 of Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform

Funding

Chan Zuckerberg Initiative Chan Zuckerberg Biohub NIH/NHLBI Canadian Institutes of Health Research McMaster University

History

Usage metrics

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Keywords

Licence

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