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Additional file 15: of Conserved and specific features of Streptococcus pyogenes and Streptococcus agalactiae transcriptional landscapes

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posted on 22.03.2019, 05:00 by Isabelle Rosinski-Chupin, Elisabeth Sauvage, Agnès Fouet, Claire Poyart, Philippe Glaser
Figure S7. DNA sequence alignment and structure prediction of the 5′ UTR of ftsA . The DNA sequences of ftsA 5′ UTR in six streptococci were extracted from NCBI sequence database. The 5′ UTR sequence was predicted by checking for the presence of a potential − 10 box 7–9 nt upstream of the first nucleotide. Alignment and folding prediction were performed by using LocARNA ( http://rna.informatik.uni-freiburg.de/LocARNA ). Compatible base pairs are colored, where the hue shows the number of different types C-G, G-C, A-U, U-A, G-U or U-G of compatible base pairs in the corresponding columns. The saturation decreases with the number of incompatible base pairs. Accession numbers: S. agalactiae: NC_004368.1; S. gallolyticus: NC_017576.1; S. mutans: NC_004350.2; S. thermophilus: CP016877; S. uberis: NC_012004.1. (PDF 580 kb)


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