Additional file 14 of Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

Additional file 14. Hormone-pathway gene expression in Arabidopsis and two cassava genotypes. Figure S9. SA-pathway genes. Many species differences were observed, including weaker induction of MeICS1 than AtICS1 and reciprocal regulation of genes between Arabidopsis and one of the two genotypes (biosynthesis gene MePAL1a-c and signaling genes MeCBP60a1, MeCBP60b1-2, MeSMTb-c, MeGRX480a and c, MeNPR1, MeSARD1a, MeWRKY70a-b, and MeEDS5a-c). Figure S10. ET-pathway genes. Many species differences were observed, including differing regulation of the ACS family biosynthesis genes and key JA/ET pathway signaling gene AtERF1. Figure S11. ABA-pathway genes. Many species differences were observed, including reciprocal regulation of genes between Arabidopsis and one of the two genotypes (biosynthesis genes: MePDS, MeABA4, MeNCED2a, MeNCED3a and b; modification genes: CYP707A1a and b; and signaling genes: MeAGH3a, MeATHB7a and b, MeHAI1a and b, and MeNAC019c). Figure S12. JA-pathway genes. Species generally responded similarly. Genes involved in biosynthesis, modification, transport and in transducing or responding to the hormone (signaling) were identified from the literature and cassava orthologs were identified (Additional file 15). Expression of hormone-pathway genes detected during hormone treatment in Arabidopsis, ECU72 and COL2246 are presented as log2FC values. Biosynthetic genes are ordered by their approximate step in the pathway, while other genes are ordered alphabetically. To enable comparison, orthologous genes in Arabidopsis and cassava are denoted by box color. Undetected genes are shown in grey.