Additional file 11 of The distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana resolve the Central Dogma’s information flow

Zhong, Ziming; Bailey, Mark; Kim, Yong-In; Afsharyan, Nazanin P.; Parker, Briony; Arathoon, Louise; Li, Xiaowei; Rundle, Chelsea A.; Behrens, Andrew; Nedialkova, Danny; Slavov, Gancho; Hassani-Pak, Keywan; Lilley, Kathryn S.; Theodoulou, Frederica L.; Mott, Richard

doi:10.6084/m9.figshare.30240439.v1

Additional file 11 of The distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana resolve the Central Dogma’s information flow

https://doi.org/10.6084/m9.figshare.30240439

journal contribution

posted on 2025-09-30, 03:50 authored by Ziming Zhong, Mark Bailey, Yong-In Kim, Nazanin P. Afsharyan, Briony Parker, Louise Arathoon, Xiaowei Li, Chelsea A. Rundle, Andrew Behrens, Danny Nedialkova, Gancho Slavov, Keywan Hassani-Pak, Kathryn S. Lilley, Frederica L. Theodoulou, Richard Mott

Additional file 11: Text T1 Analysis linking estimated codon effects to mRNA half-lives.

Funding

Biotechnology and Biological Sciences Research Council Max Planck Institute for Biochemistry, Germany Horizon 2020 Framework Programme

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DOI - Is supplement to The distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana resolve the Central Dogma’s information flow

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Gene-body methylation Mim-tRNAseq RNAseq Ribosome-associated expression Gene expression Protein expression Data-independent acquisition Genome assembly Chromatin interaction Long reads Central Dogma

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Additional file 11 of The distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana resolve the Central Dogma’s information flow

Funding

Biotechnology and Biological Sciences Research Council Max Planck Institute for Biochemistry, Germany Horizon 2020 Framework Programme

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