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Software schematics.

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posted on 09.08.2012, 01:15 authored by Julien Colomb, Lutz Reiter, Jedrzej Blaszkiewicz, Jan Wessnitzer, Bjoern Brembs

The experimenter enters information (in red) about the fly and the platform (semi-automatically) into the tracker application (BuriTrack). The tracker saves this information along with a time stamp in an XML file. Online analysis of the video leads to the extraction of the position of the fly over time, which is directly saved to the data file. The analysis software (CeTrAn) then reads a text file indicating the path to the XML file and the fly grouping information. It then automatically imports the data, transforms it into an easily workable class of data (ltraj) and performs the analyses following different variables the experimenter can set (in red). As outputs, CeTrAn writes R workspaces (before and after the analysis), a csv file of the computed parameters and pdf files where those metrics are plotted against the group factor.

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