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Pre-processed Affymetrix data analysis pipeline.

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posted on 22.12.2010, 00:17 by Barbara Di Camillo, Tiziana Sanavia, Elisabetta Iori, Vincenzo Bronte, Enrica Roncaglia, Alberto Maran, Angelo Avogaro, Gianna Toffolo, Claudio Cobelli

A selection method was applied to identify differentially expressed genes. Selected genes were clustered according to their time expression profile; significantly associated pathways and GO terms were identified through enrichment analysis. The enriched GO terms were grouped into different functional categories. For each cluster and for each GO category, GO enrichment based on Fisher's Exact Test was calculated.

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