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PAPST Gene Assignment of Super Enhancers Compared to HOMER and the Literature.
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posted on 2015-05-13, 03:40 authored by Paul W. Bible, Yuka Kanno, Lai Wei, Stephen R. Brooks, John J. O’Shea, Maria I. Morasso, Rasiah Loganantharaj, Hong-Wei SunPAPST was compared to two others gene assignments for super enhancer regions. PAPST and HOMER are 98% consistent with each other. The discrepancy with the Hnisz et al. [16] assignment is most likely due to the different versions of RefGene used (mostly new non-coding gene annotations).
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Peak Assignmentdomain workPAPSTgenomic regionsenhancer analysiscommand line toolsinstallation procedurescustomization featuresemPowerful Java Platformtranscription factorsonline toolscustomizable toolusability issuesResponse timesUser Friendlypurpose featuresgenomic researchLinux expertisetfcase studycommand linegenomic data analysis
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