Overview of biological processes altered in pseudoflowers.
(A) Simplified gene ontology biological processes (GOBP) network showing processes enriched among genes with expression altered in Pucciniamonoica-induced pseudoflowers (‘Pf’) compared to uninfected Boecherastricta stems and leaves (’SL’) and B. stricta flowers (‘F’) compared to ‘SL’. Node size with average GOBP fold induction (average of log2 ratios of all genes within a GOBP in ‘Pf’/’SL’ and ‘F’/’SL’, respectively) from green for average induction folds < 0 that indicates down-regulation to red for average induction folds > 0 that indicates up-regulation (node color). Some nodes and edges have been omitted for clarity. (B) Detailed GOBP network showing processes enriched among genes with expression altered in ‘Pf’ vs. ‘SL’. Genes highlighted in the text are indicated with diamonds connected to dashed lines to the processes they are involved in. This network shows same topology as in (A).