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Correlation between imputed and typed dosages (r2dosage) of polymorphic amino acids in the B58BC as a function of typed allele frequency for imputation from the (a) Affymetrix 500 K or (b) Illumina Immunochip platform using the HapMap-CEPH reference panel, and imputation from the (c) Affymetrix 500 K or (d) Illumina Immunochip platform using the T1DGC reference panel.

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posted on 06.06.2013, 01:05 by Xiaoming Jia, Buhm Han, Suna Onengut-Gumuscu, Wei-Min Chen, Patrick J. Concannon, Stephen S. Rich, Soumya Raychaudhuri, Paul I.W. de Bakker

Black points indicate bi-allelic positions. Red points indicate poly-allelic positions.

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