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Alignment score vs. distance.

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posted on 26.02.2013, 10:33 authored by Daniel A. Dalquen, Adrian M. Altenhoff, Gaston H. Gonnet, Christophe Dessimoz

Pairwise alignment scores compared to Percent Accepted Mutation (PAM) distance for one run of mammalia-like dataset 1. A) For insertion and deletion rate 0.001. Scores were normalised by the sum of the aligned characters in both sequences. ; B) with 18 percent ambiguous characters. Scores were normalised by the sum of the aligned characters in both sequences. .

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