Alignment score vs. distance.
figureposted on 2013-02-26, 10:33 authored by Daniel A. Dalquen, Adrian M. Altenhoff, Gaston H. Gonnet, Christophe Dessimoz
Pairwise alignment scores compared to Percent Accepted Mutation (PAM) distance for one run of mammalia-like dataset 1. A) For insertion and deletion rate 0.001. Scores were normalised by the sum of the aligned characters in both sequences. ; B) with 18 percent ambiguous characters. Scores were normalised by the sum of the aligned characters in both sequences. .