Alignment of whole-genome sequences using draft genomes of OHSU_I isolates (un-cloned, C4 and C6) and OHSU_II isolates (un-cloned, C1 and C2).

Homologous locally collinear blocks among genomes are connected with a line and identified by the same color using progressiveMauve. Blocks that are inverted compared to the OHSU_I (un-cloned) genome are placed under the center line of the genome. Gene rearrangements or inversions among the genomes are indicated. The genome content dissimilarities among these isolates were calculated and are shown in Table 3.