figshare
Browse
pgen.1007900.g002.tif (179.74 kB)

Workflow showing the main steps applied for identifying TEs present at high frequencies in high recombination regions in the D. melanogaster genome.

Download (179.74 kB)
figure
posted on 2019-02-12, 18:29 authored by Gabriel E. Rech, María Bogaerts-Márquez, Maite G. Barrón, Miriam Merenciano, José Luis Villanueva-Cañas, Vivien Horváth, Anna-Sophie Fiston-Lavier, Isabelle Luyten, Sandeep Venkataram, Hadi Quesneville, Dmitri A. Petrov, Josefa González

LRR: TEs located at low recombination rate regions. HRR: TEs located at high recombination rate regions. Fixed: HRR TEs at frequencies > 95% in all populations. LowFreq: low frequency HRR TEs (frequencies < 10% in all samples). HighFreq: high frequency HRR TEs (frequencies < 95% in all samples and at >10% frequency in at least three samples). HighFreq TEs were further classified according to their frequency in African (AF) and/or out-of-Africa (OOA) populations: AF: TEs at high frequency only in the African population; AF-OOA: TEs at high frequency in Africa and out-of-Africa populations; OOA: TEs at high frequency in out-of-Africa populations and low frequency in the African population and NA-AF: TEs present at high frequency in out-of-Africa populations but for which we have no data for the African population.

History