Visualization of the CLC Genomics workbench pipeline used to identify putative ToBRFV contigs.

The pipeline combines a quality trim for input reads, de novo assembly, blast based detection and visualization of blast output in Krona. The pipeline runs on all input data, and on a random sample of 1% of all reads. Blue process steps indicate output, and custom plugins created for the pipeline are named CEA (CLC external application).

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