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The interaction distributions between protein residue PHE and DNA triplets containing nucleotide T (TOO, TTO and TTT) only in the training set

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posted on 2011-12-30, 23:28 authored by Zhijie Liu, Fenglou Mao, Jun-tao Guo, Bo Yan, Peng Wang, Youxing Qu, Ying Xu

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Taken from "Quantitative evaluation of protein–DNA interactions using an optimized knowledge-based potential"

Nucleic Acids Research 2005;33(2):546-558.

Published online 26 Jan 2005

PMCID:PMC548349.

© The Author 2005. Published by Oxford University Press. All rights reserved

The TOO, TTO and TTT belong to triplet types [100], [110] and [111], respectively. The interaction distributions are analyzed using different triplet size of 7.0, 7.5, 8.0, 10.0, 12.0 and 15.0 Å, respectively.

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