Taxonomic composition at class level and relative abundance of assigned and unassigned sequences using the three common methods: VSEARCH, IDTAXA and Blast.
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posted on 2024-02-29, 18:45 authored by Inès Barrenechea Angeles, Ngoc-Loi Nguyen, Mattia Greco, Koh Siang Tan, Jan PawlowskiAll monothalamids sequences, including the environmental sequences (ENFOR) and sequences not regrouped in a clade that are grouped into undetermined Monothalamids (Undet. Monothalamids) are coloured in shades of orange. More details in S3 Table.
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whose hidden diversityvast genetic diversityeastern pacific oceanclipperton fracture zone37f hypervariable region18s rrna geneforaminiferal datasets shows27 phylogenetic cladeswater metabarcodes exceptsea species represented61 novel lineageslineages separates deepwater datasetsnovel lineagesphylogenetic analysisnew lineagesfive lineageswidely distributedunassigned metabarcodessignatures designedsea meiofaunasea foraminiferareference databasesparticularly trueone casemarine eukaryoteslargely unexploredfuture applicationseukaryotic microbiotadeep seabased classificationalso present311 deep
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