figshare
Browse

Stop cassette optimization

Download (7.03 MB)
Version 65 2025-09-26, 22:43
Version 64 2025-08-10, 04:09
Version 63 2025-07-31, 03:28
Version 62 2025-05-13, 01:25
Version 61 2025-01-18, 17:52
Version 60 2024-07-07, 23:53
Version 59 2024-06-29, 19:50
Version 58 2024-06-17, 02:46
Version 57 2023-12-03, 03:29
Version 56 2023-07-02, 19:19
Version 55 2023-04-12, 01:46
Version 54 2023-04-11, 06:17
Version 53 2023-04-07, 08:03
Version 52 2023-04-07, 03:47
Version 51 2023-04-02, 18:29
Version 50 2023-02-08, 01:57
Version 49 2023-01-29, 01:31
Version 48 2023-01-28, 04:33
Version 47 2022-12-18, 06:29
Version 46 2022-12-06, 22:46
figure
posted on 2021-09-22, 22:13 authored by Hyung-song NamHyung-song Nam, Mario Capecchi
<div>During my early experimentation with the <i>ROSA26<sup>Ai14</sup></i> allele mice, I noticed some basal fluorescence in the V-SVZ cells.</div><div><br></div><div>While constructing some constructs here and there, figured out what is going on.</div><div><br></div><div>Some self-explanatory data from the tests of 3x repeats of an SV40 polyadenylation sequence from a Clontech plasmid as stop cassette. An illustration of what I mean by 3pA "leaks in vivo" (as noted in https://www.addgene.org/133574/).</div><div><br></div><div>Then I tried to "fix" the basal fluorescence.</div><div><br></div><div>Because the bGH pA - 3x SV40 pA doesn't leak in vivo, a truncated version of that stop cassette with one less copy of SV40 pA was constructed (to make the length similar to 3x SV40 pA).</div><div><br></div><div>Finally, there may be reasons why the basal fluorescence may be beneficial. Since the <i>ROSA26<sup>Ai14</sup></i> allele works so well, I don't think there is a good reason to spend the time, effort, and the resources to find out with another new reporter allele. So I haven't tested this construct as a knock-in yet, but is deposited for anybody interested at https://www.addgene.org/133576/. It may be useful for other purposes.</div><div><br></div><div>The <i>ROSA26-CAG-LSL-Mitochondrial miniSOG-T2A-tdTomato</i> mouse line was a project initiated by Dr. Dimitri Tränkner, and conducted in collaboration by Drs. Hyung-song Nam, Emanuele Panza, and Dimitri Tränkner.</div>

History