SNPweights self-assignment of ancestry for candidate reference breed individuals following evaluation of open herdbook breeds using: (A) the BC7K, or (B) the BC13K marker panels.
figureposted on 26.08.2019, 17:24 by Tamar E. Crum, Robert D. Schnabel, Jared E. Decker, Luciana C. A. Regitano, Jeremy F. Taylor
Reference breed panels were constructed by random sampling ≤50 individuals per breed and SNP weights were estimated using the BC7K and BC13K marker sets.
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CRUMBLER pipeline extractsreference population SNP datasetsemi-automated ancestry estimation platformreference population sizeheterosireference panelbreed association pedigree informationdairy production systemsbody conformation phenotypesreference population allele frequenciesnucleotide polymorphism locicattle genotype dataspecies agnostic pipelineADMIXTUREancestry estimationDNAtoolbreed compositionlivestock genomics research communitybreed composition estimationtrait locus effects