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Phylogeography of the Solanaceae-infecting Basidiomycota fungus AG-3 based on sequence analysis of two nuclear DNA loci-4
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posted on 2011-12-31, 10:07 authored by Paulo C Ceresini, H David Shew, Timothy Y James, Rytas J Vilgalys, Marc A CubetaCopyright information:
Taken from "Phylogeography of the Solanaceae-infecting Basidiomycota fungus AG-3 based on sequence analysis of two nuclear DNA loci"
http://www.biomedcentral.com/1471-2148/7/163
BMC Evolutionary Biology 2007;7():163-163.
Published online 13 Sep 2007
PMCID:PMC2048936.
correspondent to respective site numbers described in the additional files and . The inferred gene genealogies are based on 100,000 simulations of the coalescent with Waterston's estimates of Θ (M) = 2.57 for pP42F and 2.27 for pP89. The time scale is expressed in coalescent units of 4N (where N is the populations size). The letters below the tree designate the distinct haplotypes, their total or geographically distinct observed frequencies. Based on estimates of gene flow between the Northern US and Eastern NC populations from AG-3 PT (Table 2), the coalescent was inferred pooling the two populations of the pathogen for the pP42F locus.