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Periodicity is not imparted by protein motifs.

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posted on 06.10.2020, 17:24 by Aletheia Atzinger, Jeffrey G. Lawrence

Autocorrelations of dinucleotide spacings were calculated for 27 genomes using all spacings (set I), or calculated by omitting either spacings between pairs of dinucleotides at the first and second codon positions within the same genes (set II), or spacings between pairs of dinucleotides at the third and first codon positions within the same genes (set III). Damped sine curves were fit to all three data sets. (A) Differences in goodness of fit between sets I and II (blue) or I and III (red). (B) Differences in amplitude between sets I and II (blue) or I and III (red). (C) Differences in period between sets I and II (blue) or I and III (red). The mean (μ) and standard deviation (σ) of the distributions of differences for the 27 genomes are displayed.

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