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PCR and RT-LAMP templates and products.

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posted on 2024-03-25, 17:22 authored by Joaquín Abugattas-Núñez del Prado, Angélica Quintana Reyes, Julio Leon, Juan Blume La Torre, Renzo Gutiérrez Loli, Alejandro Pinzón Olejua, Elena Rocío Chamorro Chirinos, Félix Antonio Loza Mauricio, Jorge L. Maguiña, Piere Rodriguez-Aliaga, Edward Málaga-Trillo

Visualization of various RT-PCR products, in vitro synthetized RNA templates and RT-LAMP products used for RCSMS standardization, on 1% agarose gels stained with ethidium bromide. (A) RT-PCR products used as DNA templates for the generation of in vitro transcribed RNAs; Lane 1: 931 bp viral N gene fragment, Lane 2: 557 bp viral E gene fragment, Lane 3: 653 bp viral S gene fragment; Lane 4: 751 bp viral Nsp6 to Nsp8 gene fragment, Lane 5: 815 bp viral Nsp10 to Nsp12 gene fragment, Lane 6: 428 bp human POP7 RNAse gene fragment, Lane 7: RT-PCR Negative control, Lane L: GenRuler 100bp Plus DNA Ladder (Thermo). (B) in vitro generated RNA templates; Lane 1: viral N gene; Lane 2: viral E gene; Lane 3: viral S gene; Lane 4: viral Nsp6 to Nsp8 gene; Lane 5: viral Nsp10 to Nsp12 gene; Lane 6: human RNAse POP7 gene. (C) Titration of E gene RNA input in 10 μl RT-LAMP reactions to obtain the characteristic LAMP ladder product; Lane L GenRuler 100bp Plus DNA Ladder (Thermo); Lane 1: reaction with 0 copies; Lane 2: reaction with 1 copy; Lane 3: reaction with 5 copies, Lane 4: reaction with 10 copies; Lane 5: reaction with 20 copies; Lane 6: reaction with 50; Lane 7: reaction with 100 copies; Lane 8: reaction with 250 copies.

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