Manhattan plots derived from GWAS analysis for all evaluated traits.
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posted on 2022-05-18, 17:31 authored by Juan Pariasca-Tanaka, Mbolatantely Fahazavana Rakotondramanana, Sarah Tojo Mangaharisoa, Harisoa Nicole Ranaivo, Ryokei Tanaka, Matthias WissuwaY-axis shows the negative logarithm of the association ((-log10 (P-value)) for each SNP, while X-axis displays the SNP location along the 12 chromosomes. Vertical line indicates a -log10 (P-value) threshold of 5.
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wide association studytarget environment rathersd1 ), confirmingpreferential resource allocationknown major genesidentify potential donorstotal panicle weightsuperior panicle weighttotal plant biomassn deficiency suggestedlocal cultivation conditionsinitiate variety developmentchromosomes 5 (<low soil fertilityimproving rice yielddiv >< psmallholder farm conditionsminor advantageous alleleslow fertilitylocal varietystraw weightsmallholder farmsplant heightnutrient deficiencyminor allelesrice (<11 (<two qtlsstaple foodroot growthrice productionqlft5 qlft11 national levelmineral fertilizersloci associatedhighest worldwideheading dateexternal inputscentral highlands
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