pone.0226608.g005.tif (1.67 MB)

How “simple” methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish - Fig 5

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posted on 24.01.2020, 18:37 by Carly F. Graham, Douglas R. Boreham, Richard G. Manzon, Wendylee Stott, Joanna Y. Wilson, Christopher M. Somers

Discriminant analysis of principle components (DAPC) of all sample sites with increasing sequencing depth (-m) in the ustacks module with m3 (a, b), m6 (c, d), m10 (e, f), m15 (g, h) and m20 (i, j) in library A (a, c, e, g, i) and B (b, d, f, h, j). The DAPC analysis was run with 46 principle components (N/3) for the analysis. Distinct ellipses indicate population differentiation. Site abbreviations can be found in Table 1.

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