Heatmaps showing how strongly each embedding dimension (y-axis) correlates with each metabolic pathway (x-axis), for both our contextualized embeddings and the prior GloVe embeddings.
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posted on 2025-05-07, 20:08 authored by Quintin Pope, Rohan Varma, Christine Tataru, Maude M David, Xiaoli FernHeatmaps showing how strongly each embedding dimension (y-axis) correlates with each metabolic pathway (x-axis), for both our contextualized embeddings and the prior GloVe embeddings.
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substantial distribution shiftsrepresented differently accordingnatural language processinglanguage &# 8221including taxonomic relationshipsdomain prediction tasksspecific microbial environmentsingle microbial taxonmicrobial &# 8220common compositional patternsdeep language modelmicrobial communitiesdiet patternsxlink ">test datasupervised fashionsignificantly outperformsnlp ).model neverindependent studiesexplicitly exposedbiological pathwaysbaseline modelsadapting techniques
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