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Heat map representation of relative expression based on FPKM values of differentially methylated fragments in various developmental tissues as identified in MSAP analysis.

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posted on 2016-02-22, 10:01 authored by Gulshan Kumar, Usha Kumari Rattan, Anil Kumar Singh

The majority of demethylated fragments showed upregulation under low chill conditions as compared to high chill conditions. The relative expression of majority of methylated fragments was downregulated. The relative FPKM values were used to generate the heat-map using MeV4. The color scale at the bottom represents the expression level, where red, green and black colors indicate upregulation, downregulation and unaltered expression, respectively. Contig number (starting with C_) and their annotation are given on the left and right side of the heat map, respectively.