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GC percent at sequence level of different feature types in the TGAC 1 assembly of Chalara fraxinea and associated read sets

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posted on 24.05.2013, 16:14 by Dan MacLean

The TGAC Chalara assembly at 

https://github.com/ash-dieback-crowdsource/data/tree/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1

and gDNA and RNAseq reads at

https://github.com/ash-dieback-crowdsource/data/tree/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/reads

 

and the TGAC annotation at

https://github.com/ash-dieback-crowdsource/data/tree/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/annotations/Gene_predictions/TGAC_Chalara_fraxinea_ass_s1v1_ann_v1.1

 

were used as source for per sequence GC content examination. Sequence for features (CDS,exons, genes, introns, intergenic were extracted from the scaffold sequence based on the GFF annotation file).

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