Fig 3.tif (1.04 MB)
Download file

Examples of multree reduction in single locus data sets.

Download (1.04 MB)
posted on 13.02.2015, 15:41 authored by Michelle M. McMahon, Akshay Deepak, David Fernández-Baca, Darren Boss, Michael J. Sanderson

A. Highly ranked tree for query “Brassica” inferred from a single-locus data set aligned at the level of Brassicaceae (data set #56065; phenylalanine ammonia-lyase). B. Reduction of the tree in A to species-level relationships without conflict. Note the loss of one taxon, Brassica napus; this taxon was present in many quartets in the original tree, but each one was contradicted by at least one other quartet. Therefore no conflict-free information was present for this taxon, and it was removed by the algorithm. C. Low ranked tree from query “Drosophila” (data set #130188; SMOX gene) in which there are no informative edges so the multree reduction produces a null result (no edges, no taxa; not shown). D. Intermediate ranked tree in which only one taxon has multiple sequences and the reduced singly-labeled tree contains all taxa (data set #91190; ‘yolk protein 1’; reduced tree not shown, but can be obtained by deleting all but one of the leaves labeled Drosophila grimshawi).