Creation of artificial recombinants with known breakpoints to test jpHMM and Simplot accuracy
figureposted on 2011-12-31, 00:10 authored by Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, Carla Kuiken, Bette Korber, Burkhard Morgenstern, Mario Stanke
Taken from "A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes"
BMC Bioinformatics 2006;7():265-265.
Published online 22 May 2006
PMCID:PMC1525204.(A) The artificial recombinant, constructed from two different clades, has the actual breakpoints at every X-th nucleotide for = 500, 1000, 1500. Only the construction with = 1000 is shown here. (B) The phylogenetic tree demonstrates the relations and relative distances between the clades used in the artificial recombinants' construction.