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Download fileComparisons of the sensitivity and specificity of Bcftools and VarScan2 with different sample modes.
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posted on 2022-01-31, 18:24 authored by Jing Liu, Qingmiao Shen, Haigang BaoA: Comparisons of the sensitivity between Bcftools-single and Bcftools-multiple; B: Comparisons of the specificity between Bcftools-single and Bcftools-multiple; C: Comparisons of the sensitivity between VarScan2-single and VarScan2-multiple; and D: Comparisons of the specificity between VarScan2-single and VarScan2-multiple.
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wide association studiespopulation genetics analysesdifferent depth gradients50k snp arraythroughput ngs datahuman ngs datachicken ngs datasequencing depth greaterspecificities beyond 20xselect suitable pipelinesgenome analysis toolkitgeneration sequencing datahighest sensitivity numericallygatk ), bcftoolschickens </ pdetected snps increasedngs datasequencing depthgeneration sequencinghighest sensitivitysnp numberssnp arraysmany snpwidely usedtook advantagesixteen chickenspipeline increasedobvious changesobtain snpsfreebayes pipelinesfindings provideexcept freebayesexceed 20xdetecting snpscalling pipelinesbest choicebecome convenientalso genotyped
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