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CAZY (carbohydrate processing enzymes) PFAM containing proteins in TGAC Chalara fraxinea assembly 1, Postia placenta and Fusarium graminareum

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posted on 24.05.2013, 16:14 by Dan MacLean

Proteins predicted in Chalara fraxinea (https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/annotations/Gene_predictions/TGAC_Chalara_fraxinea_ass_s1v1_ann_v1.1/Chalara_fraxinea_ass_s1v1_ann_v1.1.protein.faa)

Postia placenta (http://genome.jgi.doe.gov/Pospl1/Pospl1.home.html)

and 

Fusarium graminareum

(http://www.broadinstitute.org/annotation/genome/fusarium_group/MultiHome.html)

 

were used in PFAMSCAN to identify proteins containing domains from the list at E<=1e-6:

 

#name clan id
Alpha-amylase Glyco_hydro_tim CL0058
Alpha_L_fucos Glyco_hydro_tim CL0058
Cellulase Glyco_hydro_tim CL0058
Cellulase-like Glyco_hydro_tim CL0058
DUF187 Glyco_hydro_tim CL0058
DUF4015 Glyco_hydro_tim CL0058
DUF4038 Glyco_hydro_tim CL0058
DUF4434 Glyco_hydro_tim CL0058
GHL1-3 Glyco_hydro_tim CL0058
GHL12 Glyco_hydro_tim CL0058
GHL13 Glyco_hydro_tim CL0058
GHL15 Glyco_hydro_tim CL0058
GHL5 Glyco_hydro_tim CL0058
GHL6 Glyco_hydro_tim CL0058
Glyco_hydr_30_2 Glyco_hydro_tim CL0058
Glyco_hydro_1 Glyco_hydro_tim CL0058
Glyco_hydro_10 Glyco_hydro_tim CL0058
Glyco_hydro_101 Glyco_hydro_tim CL0058
Glyco_hydro_114 Glyco_hydro_tim CL0058
Glyco_hydro_14 Glyco_hydro_tim CL0058
Glyco_hydro_17 Glyco_hydro_tim CL0058
Glyco_hydro_18 Glyco_hydro_tim CL0058
Glyco_hydro_20 Glyco_hydro_tim CL0058
Glyco_hydro_25 Glyco_hydro_tim CL0058
Glyco_hydro_26 Glyco_hydro_tim CL0058
Glyco_hydro_2_C Glyco_hydro_tim CL0058
Glyco_hydro_3 Glyco_hydro_tim CL0058
Glyco_hydro_30 Glyco_hydro_tim CL0058
Glyco_hydro_31 Glyco_hydro_tim CL0058
Glyco_hydro_35 Glyco_hydro_tim CL0058
Glyco_hydro_39 Glyco_hydro_tim CL0058
Glyco_hydro_42 Glyco_hydro_tim CL0058
Glyco_hydro_44 Glyco_hydro_tim CL0058
Glyco_hydro_53 Glyco_hydro_tim CL0058
Glyco_hydro_56 Glyco_hydro_tim CL0058
Glyco_hydro_59 Glyco_hydro_tim CL0058
Glyco_hydro_66 Glyco_hydro_tim CL0058
Glyco_hydro_70 Glyco_hydro_tim CL0058
Glyco_hydro_72 Glyco_hydro_tim CL0058
Glyco_hydro_77 Glyco_hydro_tim CL0058
Glyco_hydro_79n Glyco_hydro_tim CL0058
Glyco_hydro_97 Glyco_hydro_tim CL0058
Glyco_hydro_cc Glyco_hydro_tim CL0058
hDGE_amylase Glyco_hydro_tim CL0058
Lipid_bd Glyco_hydro_tim CL0058
Melibiase Glyco_hydro_tim CL0058
NAGidase Glyco_hydro_tim CL0058
NAGLU Glyco_hydro_tim CL0058
Raffinose_syn Glyco_hydro_tim CL0058
Xylanase Glyco_hydro_tim CL0058
Alg14 Glyco_tran_28_C PF04101
Capsule_synth Glyco_tran_28_C PF04101
DUF1205 Glyco_tran_28_C PF04101
DUF1972 Glyco_tran_28_C PF04101
DUF3492 Glyco_tran_28_C PF04101
DUF354 Glyco_tran_28_C PF04101
Epimerase_2 Glyco_tran_28_C PF04101
Glyco_tran_28_C Glyco_tran_28_C PF04101
Glyco_trans_1_2 Glyco_tran_28_C PF04101
Glyco_trans_1_3 Glyco_tran_28_C PF04101
Glyco_trans_1_4 Glyco_tran_28_C PF04101
Glyco_trans_4_2 Glyco_tran_28_C PF04101
Glyco_trans_4_3 Glyco_tran_28_C PF04101
Glyco_trans_4_4 Glyco_tran_28_C PF04101
Glyco_transf_20 Glyco_tran_28_C PF04101
Glyco_transf_28 Glyco_tran_28_C PF04101
Glyco_transf_4 Glyco_tran_28_C PF04101
Glyco_transf_41 Glyco_tran_28_C PF04101
Glyco_transf_5 Glyco_tran_28_C PF04101
Glyco_transf_56 Glyco_tran_28_C PF04101
Glyco_transf_9 Glyco_tran_28_C PF04101
Glyco_transf_90 Glyco_tran_28_C PF04101
Glycogen_syn Glyco_tran_28_C PF04101
Glycos_transf_1 Glyco_tran_28_C PF04101
Glycos_transf_N Glyco_tran_28_C PF04101
Glyphos_transf Glyco_tran_28_C PF04101
LpxB Glyco_tran_28_C PF04101
MGDG_synth Glyco_tran_28_C PF04101
Mito_fiss_Elm1 Glyco_tran_28_C PF04101
Phosphorylase Glyco_tran_28_C PF04101
PIGA Glyco_tran_28_C PF04101
PS_pyruv_trans Glyco_tran_28_C PF04101
SUA5 Glyco_tran_28_C PF04101
Sucrose_synth Glyco_tran_28_C PF04101
UDPGT Glyco_tran_28_C PF04101
Aldose_epim Lyase_8 PF02278
Bgal_small_N Lyase_8 PF02278
DUF4432 Lyase_8 PF02278
Gal_mutarotas_2 Lyase_8 PF02278
Glyco_hyd_65N_2 Lyase_8 PF02278
Glyco_hydro_38C Lyase_8 PF02278
Glyco_hydro_65N Lyase_8 PF02278
Lyase_8 Lyase_8 PF02278
MdoG Lyase_8 PF02278
Rhamnogal_lyase Lyase_8 PF02278
YidC_periplas Lyase_8 PF02278

(identified from CAZy - Home

 

Counts of proteins containing each PFAM domain are shown

 

 

 

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