publication_data_CalCEN_v1.0.0_20201230.tar.gz (961.6 MB)

publication_data_CalCEN_v1.0.0_20201230.tar.gz

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dataset
posted on 03.01.2021, 17:04 by Matthew O'Meara, Teresa O'Meara
Data for

TR O'Meara, MJ O'Meara, M Sphere, 2020
DeORFanizing Candida albicans Genes using Co-Expression

Code available at
http://github.com/momeara/CalCEN


Candida Albicans Co-Expression Network (CalCEN) version 1.0.0


Files
chromsome_features.tsv
- Candida albicans SC5314chromsome features collected from Candida Genome Database 12-Jun 2018

genes.tsv
- Curated set of 6226 genes use in this study

expression_runs.tsv
- Curated set of RNA-seq runs used in this study

estimated_expression.tsv
- gene by RNA-seq run expression levels

CalCEN_network.tsv
- Co-expression network

blastp_network.tsv
- blastp sequence similarity network

sac_gene.tsv
- genetic associations between orthologous Sac genes Network

sac_gene.tsv
- physical protein-protein interaction between orthologous Sac genes Network

yeast_net_network.tsv
- YeastNet between orthologous Sac genes network

go_annotations.tsv
- GO annotations from Candida Genome Database collected 12-Jun 2018

gba_summary.tsv
- Summary of guilt-by-association gene-function prediction

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