Every Base is Sacred: Most pervasive transcription in mammalian genomes is a consequence of selection

Name: Every Base is Sacred: Most pervasive transcription in mammalian genomes is a consequence of selection
Published: 2025-03-10T20:08:32+00:00
License: https://creativecommons.org/licenses/by/4.0/
Keywords: HPRT1 gene, Random Genome Project, Reversed Genome, Puffin-D, Machine Learning

dataset

posted on 2025-03-10, 20:08 authored by Brett AdeyBrett Adey

Repository contains:

100kb regions of the human genome selected for high or low transcription for use in Puffin-D and two .bed files listing their positions.
HPRT1, HPRT1R, and HPRT1RNoCpG regions used in Camellato et al., 2024.
Puffin-D Numpy outputs for all 100kb fastas.
By-chromosome fasta files containing 100kb chunks for the T2T forward and reverse genomes.
Gif showing the changing distribution of inter-cluster distances across varying read thresholds.

Every Base is Sacred: Most pervasive transcription in mammalian genomes is a consequence of selection

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The Marsden Grant

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