Table_3.xls (9.5 kB)

Virus species found in the sample.

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posted on 15.02.2012, 00:56 by Fredrik Lysholm, Anna Wetterbom, Cecilia Lindau, Hamid Darban, Annelie Bjerkner, Kristina Fahlander, A. Michael Lindberg, Bengt Persson, Tobias Allander, Björn Andersson

The contigs split by virus species defined through closest homolog and sorted by the descending total number of derived reads and contigs. The species list have been manually curated and grouped in cases where yet unclassified strains dilute the species designation. Species producing a single read have also been removed. Furthermore, all alignments with an e-value at or above 1e-5 were ignored (this excluded 184 sequences, for which no species designation is provided).