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USEARCH-based matching of unique plastid-targeted proteins.

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posted on 13.11.2014, 03:35 by Scott Schaeffer, Artemus Harper, Rajani Raja, Pankaj Jaiswal, Amit Dhingra

Datasets comprised of putative plastid-targeted proteins unique to each species were clustered against the predicted plastid-targeted protein sequences of Arabidopsis thaliana (At) from Chloroplast2010 and TAIR V10, Solanum lycopersicum (Sl), and a database consisting of the plastid-targeted proteins from all 6 species using USEARCH. Sequences were clustered globally with 40% coverage with 40% identity (40/40). Results suggest that a large portion of the plastid-targeted proteins may be unique to each respective species.

USEARCH-based matching of unique plastid-targeted proteins.

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